I do not know if any one as requested this but here is something I think is important.
There needs to be a way to set you fleet into a distinct formation and keep them in that formation as they jump into a planet. For one this will allow you to prepare for entry with say your capitol ships in the front line (heavier armor and guns) will be the first to absorb the initial salvos from the defenders gun emplacments and will more than likely survive the hit.
Then the fleet can launch bombers etc from from behind the big boys. Naturally a formation will not stay consistent throughout a battle, but it would be nice to allign my ships in a way that maximize their attack power.
Also, I think fighters need to be smarter about whom they attack. A proper fighter screen should engage bommber first - then fighters - then small ships.