The issue here seems to be that the starbase has shield mitigation while it is being constructed. (Obviously this is less of a concern if you're playing Vasari, but it still matters somewhat.)
I was too tired to run the math last night, and I've lost what I was working with (cut to clipboard and forgot to paste somewhere), but I was looking at about 160 DPS to kill a starbase before/as the first upgrade completed. Call it 300 if you want to destroy it before/as it's built, as building takes about 25% longer than an upgrade.
Feel free to run the numbers yourself. For one, I didn't consider the rise of shield mitigation (just calculated it as capped), as, again, I was exhausted, so in the first few seconds you'll actually do somewhat more damage than that.