Well, 1 of the things I did was to the Phase Missile Swarm ability from the Volkuras Desolater to the Missile Defense platform.
To gain the maximum effect of the ability I edited it thus that level 1 would have the same amount of damage as level 3. However, level 2 remained the same thus the power would decrease for the ship at level 2 and be at it's original amount again at level 3.
I did the same with the Energy Weapon Cooldown of the Advent and Missile Barrage from the TEC for their respective defense turrets.
Is that clear enough or am I still too unclear about the specifics?