It does not work with 1.041 entrenchment in one incredibly specific area:
some capital ships cause minidumps when you attempt to assign their first ability.
Here is where I encountered an error:
if you try select the Halcyon Carrier's OR the Kortul Devastator's first ability, it minidumps the game. I tested several other caps, including the Kol, Sova, Skiratta, and the Rapture, and they worked fine.
As far as I know, it's only the Halcyon or Kortul that causes this. I had no other mods running and got a fresh copy of this mod from the link in the OP to see if it was a version error.
I'll check the remaining caps and edit this post if I find more minidumps
Please, please, figure out what causes this, this is a awesome mod and it makes playing alot more fun.
EDIT 1:Arg. Add the Akkan to the list.
EDIT 2:And the Anorak Marauder. I think you have to mouse over the ability that got changed in the patch to cause the minidump, though, so my really quick tests probably missed a few and it's too late to go through them all again.
I know you're busy with that big mod you're working on, which looks great btw, but please fix this up! I can't really enjoy the game when things just pop on death anymore... this being in almost every other mod out there has gotten me used to seeing these effects all the time, and now without them... it's just not the same.