I think there is one problem with the idea that you suggested though and that is your method involves splitting the fleets fire instead of focusing on a single target. Even with taking sheild mitigation into account this is still an unefficient method for destroying targets and so as a result players will still be required to micromange focus fire in order to gain the maximum efficiency.
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Heh, actually,after reading the many posts from ppl denouncing focus fire ala Admiral Akbar, I thought this is a good compromise. I don't mean there is no focus fire at all, simply that if you want your fleet to focus fire a ship(s), target and queue each ship(s) directly, not a whole stack. If you use your fleet/stack/group/etc to target/queue another stack/group/etc, then yes, the default action is spread fire/attack. I believe as has been noted many times, the AI does not use focus fire as a strategy, so why should the default human mouse/keyboard click action be focus fire? Admiral Akbar had to specifically (specially) issue a command to "focus all fire on that super star destroyer" which means that the default action in battle is probably spread fire - at least in star wars anyway.. 
I don't really want to put words in Blair's mouth, but historically, the chances of getting a new command are pretty much nil unless it'd be part of one of the expansions.
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I fully agree (more from the programming point of view), I am simply suggesting what the "default" action/algorithm could be when one left/right click on a ship or stack..
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