In the same folder with entities (GameInfo folder) search for Squad (e.g. SquadPhaseCombat is Vasari fighter strikecraft). There will be a line that says:
baseMaxNumFighters
Increase that to whatever you desire and that will alter the number of fighters per squadron. Though be warned that the build time is per strikecraft so squadrons will take longer to build unless you also change
fighterConstructionTime