Did you happened to have "Communal Labor" researched? This technology got overhauled in that patch, and is the most likely cause of the issue.
I did have that tech researched, and I'm thinking that might be the issue.
I loaded your save game and didn't see anything unusual. Is it possible you started a building construction while you were upgrading logistics. They will actually start the building with a few hull, then wait for the logistics slot research to complete.
ZombieRus5: I already upgraded my logistics capacity, then queued the structures to be built. Maybe it'll work if I reload the game. The issue was at the ice planet, Melchior.
EDIT: Reloaded my own save. Still no construction. I can't even get my drones to build a metal mine on my own planets. The ghostly image sits there, even when the constructors have nothing else in their queue.
I've also noticed some ships jumping positions in the empire tree for my fleet. I had some Vasari lansurak transporters auto-join my fleet and the empire tree put them above my flagship. Then my desolator was put under my frigates/cruisers. Weird, though essentially cosmetic.
