Ok, I keep getting a lot of error messages that are, shall we say unhelpful in identifying whats causing the problem, I shall note that im using the developer exe, though that is likely apparent from the error messages.

c:\gs\gamma\03\CodeSource\GS\Entity\Interfaces\IResearchSubject.cpp(109): assert! [m_Tier == researchWindowLocation.pos.m_X]

This one I really, really dont understand, as there is next to no research in the mod at the moment. Is it a complaint about columns no longer being dedicated to a tier?

c:\gs\gamma\03\CodeSource\Engine\Render\Mesh\Mesh.cpp(237): assert! [m_Orientation.IsLeftHandAndNormalized()]

I've got no guesses how to solve this one, obviously its a mesh error, but as it doesnt specify what mesh,  without knowing what it actually means I cant try to find it to fix it.

c:\gs\gamma\03\CodeSource\GS\Entity\Interfaces\IBuff.cpp(453): assert! [params.target != NULL]

c:\gs\gamma\03\CodeSource\GS\Entity\Interfaces\IBuffContainer.cpp(769): assert! [player != NULL]

I'm assuming these two mean that I have an error in one of my buff files, but I would have sort of assumed that would just crash the game rather being a recoverable error. 

c:\gs\gamma\03\CodeSource\GS\Entity\Interfaces\IFighter.cpp(146): assert! [hangarPoints.Size() > 0]

I get a few thousands copies of this one, my best guess is that it's complaining that there is a ship somewhere that can in theory build strikecraft doesn't have any hangar points.