So this is likely never to happen, but here are some thoughts I was having after reading some recent threads.
I really want to be able to personalize my race more. My thoughts first started out with diplomacy and how I didn't know how some things were decided if you were in the red or green with another race so for that maybe we could make through our player setup certain things about us BUT this is optional. For example, military strength, maybe you want it so your race sees high military as a negative for that race or instead want low military as a negative, there are more options I'm sure, that's just one way to personalize things.
Another can be done with fleet formations and how exactly they attack. Maybe you want a certain class of ship to have a different default ship to attack when there are multiple classes. And, you can have various formations, maybe instead of bunching a class in the front or back, spread them all around or have them cluster in the middle or circle your fleet...just some ideas. Maybe you can do this for strike craft too, were you order them to stay close and defend your fleet only, be it from other strike craft or ships, or to fight away from the main fleet so they you only fight strike craft.
There are probably some more things you can customize, such instead of auto explore for scouts, you can make them around a certain perimeter. Maybe you can decide for there to be a certain threshold amount of antimatter for a ship to have so it can autocast an ability.
I know you can do some of these things already, but I am just thinking of making things similar, having it more personalized by making unique formations outside of a game and then saving it for in game use, just things to make it easier.